PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G01110.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1773aa    MW: 194869 Da    PI: 5.3449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G01110.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-0617531773526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  ONIVA03G01110.2 1753 ICK-FHENGYCRKGASCNYLHP 1773
                       799.9999*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.108.8E-9110169IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579035.54E-8110161IPR011011Zinc finger, FYVE/PHD-type
CDDcd155681.11E-19116161No hitNo description
SMARTSM002491.6E-6116162IPR001965Zinc finger, PHD-type
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001512.7E-5341429IPR019835SWIB domain
SuperFamilySSF475926.98E-22347426IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-26348431IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16351424IPR003121SWIB/MDM2 domain
SMARTSM007191.6E-43485594IPR004343Plus-3 domain
PROSITE profilePS5136031.898485617IPR004343Plus-3 domain
SuperFamilySSF1590424.18E-34485610IPR004343Plus-3 domain
PfamPF031262.4E-25490593IPR004343Plus-3 domain
SuperFamilySSF552771.44E-15739805IPR003169GYF domain
PROSITE profilePS5082914.522752804IPR003169GYF domain
SMARTSM004442.0E-13753806IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.4E-14754805IPR003169GYF domain
PfamPF022133.5E-9755794IPR003169GYF domain
PROSITE profilePS5010314.12617481773IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-517501772IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1773 aa     Download sequence    Send to blast
MEGAAAAAGG GEMLSPGEAD WPPELRLPPP PPPSAASEGE PPPARAAVGM DDSQFLGSII  60
GLPAQPPQAT AEALAVVGVK RRRGRPPKKR DGAAAATAVV PAARPARRRE DEEEVVCFIC  120
FDGGNLVVCD RRGCPKVYHP ACIKRDEAFF QSRSKWNCGW HICSSCEKAV HYMCYTCTYS  180
LCKVCIKQGK FFSVRGTKGF CDTCYSTILL IESKDEGDTK IVVDFDDQNS WEYLFKLYWV  240
DLKGKLSLTL EELTSAKARW NAPTTYTRKE KDESSDDLYD ANNDDDAGSD CSSGKRKRNS  300
SRKKGRKRRK PDSDCSIATK KVETVTRDDG TLPNKVPTEE ASLPVDTKWA SPELLEFVGH  360
MRDGDQSFIS QFDVQALLLD YIKQNNLRDP QRKSQIICDS RLHRLFRKTR VAHFEMLKLL  420
EMHFIVSEPS AVNDGSQGII NPDSAQIDHA SGYNDMAAKF SPDRRRRMHR KMEREPQANP  480
EDYAAIDMHN INLIYLRRSL MEDLIDDPTL SDKISGAFVR IRISGLGQKQ DMYRLVKVVG  540
THKVSEKYSI GKKMTNFALE IMNLNKKEII TMDTVSNQDF TEEECKRLRQ SMKYDLISRL  600
KVGDIQEKAK IFQFVRVNDL LNTPEERARR INEVLDVHVD SHMDPDYESD DEFGNKKAVE  660
RSVNWARSDP FVSPVKVKYS NSSQKNGDAT RHLKNLSKQN TERKSGAARN FENSHSPVGM  720
DIPKSGTNVK STRCETTSPS SHGVVSSDME PEKVWHYKDP SGNVQGPFTL VQLSKWTSYF  780
PRDMRVWLTF ESEERSLLLT EVLSKQPKDF GQPASVTTSS KSTVADTGQN RNTEIVDLNK  840
APSPVGYSML NSFETTVQST KHSAPERESV NSLDDRLSHS TDSVPPKDAN ASNSQAMCQI  900
KHSGSLPSPG SPHQRSDLHH DEVQGGRSGE WNNQHNSELW SPSMPQTSSS AHSNVESHHD  960
HYPSWSQVQH DPKNSLQAGS GKDLNSRYDI AQKLPSQRIT RDVPSPVFAW SPSESRTASS  1020
QHEGSCLSST TNLCTHDELH SSIASAKAKS FAPATPVEDR GSSSPSGMLS LSERAPICSP  1080
QSAPSASASD TCKMEENMNQ QKTLEADISN TSVNQSPQSK ILPESSPDNQ DAEHEYRSPP  1140
PISESKELSP QSRTTPGSSP DNQDTEREYP SPPPISGSKE ISPQSRTILE SSPDNQDNGH  1200
EYPSPPPIPE SIELSPHSKA LPESSPDNQD IEPECPSPPQ IPESKELSRQ SKILPESSPG  1260
NQDIEPECPS PPQIPESKEL SQQSKILPES SPDNHDIKCE YSSPTPIPES KELSLQSKIL  1320
PESSSDYQDI KCEDPSPTPI SKSKEVSPQS KILSESYLDN QDVECKCPSS ILITESKELA  1380
VDLPGSISLA PEKTASTDVG ENSSLAFIFP KSTLAGDDAL KSVFDMAKAH LECEDSKVKE  1440
ELYVESTVVI RDDMVVNPAS GVESIDMSEN LLESLMEQSC GTFYMDGTTA LEGFLSGSTK  1500
EEPQCSSPIA LSTCSSPIAL SPWGEHGYYQ GDSVGSSLWG VQDDDPIGNI WPLSSQAPAL  1560
QYSSGSTAHF IDEATVTHGN NGVVLSSTPG EVGLPNSGVC TDWGLVEQVN PEANDASVSM  1620
IDKNSGLVDS QPSANDGSDV GTARNTNHNT NLSLNHETAV PLSRSSGEAS RKHGFITDLN  1680
VATSEEALGN TKNWNPSAGN ANRGSQRNHH RDRYSQISES WLLSSNYSRS RSDGFGTGGS  1740
SRSTPRGQTQ RGICKFHENG YCRKGASCNY LHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295309RKRNSSRKKGRKRRK
2295310RKRNSSRKKGRKRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0PREDICTED: zinc finger CCCH domain-containing protein 44 isoform X2
TrEMBLA0A0E0GFX90.0A0A0E0GFX9_ORYNI; Uncharacterized protein
STRINGBGIOSGA011698-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-169nucleic acid binding;zinc ion binding;DNA binding